miRBase entry: dpe-mir-2c

Stem-loop dpe-mir-2c


Accession
MI0009290
Description
Drosophila persimilis dpe-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ugguauccuuacuuucagugucaucaaaaauggcugaagaaagauauauuugcauuugaagcgUAUCACAGCCAGCUUUGAUGGGCauugcaaugagcaucga
((((...((((.((.(((((((((((((..((((((......(((((.(((.......))).))))).))))))..)))))).))))))).)))))).)))).

Structure
-    auc    c  u       -      aa      aagaaa     a   gc 
 uggu   cuua uu caguguc aucaaa  uggcug      gauau uuu  a
 ||||   |||| || ||||||| ||||||  ||||||      ||||| |||  u
 gcua   gagu aa guuaCGG UAGUUU  ACCGAC      CUAUg gaa  u
a    --c    -  c       G      CG      -----A     c   gu 


Annotation confidence Not enough data
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Genome context
scaffold_0: 10660294-10660396 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dpe-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-miR-2c

Accession MIMAT0008736
Description Drosophila persimilis dpe-miR-2c mature miRNA
Sequence 64 - UAUCACAGCCAGCUUUGAUGGGC - 86
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218