miRBase entry: dpe-mir-13b-1

Stem-loop dpe-mir-13b-1


Accession
MI0009291
Description
Drosophila persimilis dpe-mir-13b-1 precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ccaugucguuaaaauguuugugaccuuauguacucuugaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((...........)))))))))).)))))))))))...)))

Structure
   -ug           u      ccu    uacu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||    u
ggu   AGCAGUUUUAC GACACU   AUac    u
   uUG           C      ---    uaag 


Annotation confidence Not enough data
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Genome context
scaffold_0: 10659936-10660004 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dpe-mir-13b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-miR-13b

Accession MIMAT0008711
Description Drosophila persimilis dpe-miR-13b mature miRNA
Sequence 44 - UAUCACAGCCAUUUUGACGAGU - 65
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218