miRBase entry: dpe-mir-9b

Stem-loop dpe-mir-9b


Accession
MI0009301
Description
Drosophila persimilis dpe-mir-9b precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

ugcacauuauuugaUCUUUGGUGAUUUUAGCUGUAUGguguauaucaaagauccauagagcuuuaucaccaaaacccaaaugguuuuugca
((((.((((((((...(((((((((...((((.(((((..............))))).))))..)))))))))...))))))))...))))

Structure
    --c        aUC         UUU    G     uguaua 
ugca   auuauuug   UUUGGUGAU   AGCU UAUGg      u
||||   ||||||||   |||||||||   |||| |||||       
acgu   ugguaaac   aaaccacua   ucga auacc      c
    uuu        cca         -uu    g     uagaaa 


Annotation confidence Not enough data
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Genome context
scaffold_1: 9895313-9895403 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dpe-mir-9b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-miR-9b

Accession MIMAT0008745
Description Drosophila persimilis dpe-miR-9b mature miRNA
Sequence 15 - UCUUUGGUGAUUUUAGCUGUAUG - 37
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218