miRBase entry: dpe-mir-317-1

Stem-loop dpe-mir-317-1

Accession

MI0009302

Description

Drosophila persimilis dpe-mir-317-1 precursor miRNA

Gene family

MIPF0000144; mir-317

Sequence

ugcaacugccguugggauacacccugugcucgcuuugaauauggugcaagcaagUGAACACAGCUGGUGGUAUCCAAUggccguucugca
((((((.(((((((((...(((((((((.((((((................)))))).)))))..))))...))))))))).))..))))

Structure

    --  u         aua    --     c      ugaauau 
ugca  ac gccguuggg   cacc  cugug ucgcuu       g
||||  || |||||||||   ||||  ||||| ||||||        
acgu  ug cggUAACCU   GUGG  GACAC AGUgaa       g
    cu  c         AUG    UC     A      cgaacgu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_19: 735514-735603 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dpe-mir-317-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-317

Accession	MIMAT0008739
Description	Drosophila persimilis dpe-miR-317 mature miRNA
Sequence	55 - UGAACACAGCUGGUGGUAUCCAAU - 78
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218