miRBase entry: dpe-mir-9c

Stem-loop dpe-mir-9c


Accession
MI0009303
Description
Drosophila persimilis dpe-mir-9c precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

auuuuugcuguuUCUUUGGUAUUCUAGCUGUAGAuuguuuuuugcacauuguauaucaucuaaagcuuuuauaccaaagcuccagcuuaaau
((((..((((...(((((((((...((((.(((((.(.....((((...))))...)))))).))))...)))))))))...))))..))))

Structure
    uu    uuU         UCU    G     u uuuuu    c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu g     ugca  
||||  ||||   |||||||||   |||| ||||| |     |||| a
uaaa  cgac   gaaaccaua   ucga aucua c     augu  
    uu    cuc         uuu    a     - --uau    u 


Annotation confidence Not enough data
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Genome context
scaffold_1: 9894317-9894408 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dpe-mir-9c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-miR-9c

Accession MIMAT0008746
Description Drosophila persimilis dpe-miR-9c mature miRNA
Sequence 13 - UCUUUGGUAUUCUAGCUGUAGA - 34
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218