miRBase entry: dpe-mir-288

Stem-loop dpe-mir-288


Accession
MI0009310
Description
Drosophila persimilis dpe-mir-288 precursor miRNA
Gene family
MIPF0000223; mir-288


Sequence

ggccaugucguaauuagcaggguacagcguugccggcgaaaauuaaugacguuggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
((((.((((((((((.((((((..((((((.(((((((...........))))))).))))))..))).))).)))).......)))))).)))).

Structure
-    a      -------    a   -   ua      u       aaaa 
 ggcc ugucgu       aauu gca ggg  cagcgu gccggcg    u
 |||| ||||||       |||| ||| |||  |||||| |||||||    u
 ccgg acaGUA       UUAG UGU CUU  guugca ugguugc    a
g    c      CUUUACU    C   A   Ug      c       agua 


Annotation confidence Not enough data
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Genome context
scaffold_1: 9142380-9142475 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dpe-mir-288
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-miR-288

Accession MIMAT0008753
Description Drosophila persimilis dpe-miR-288 mature miRNA
Sequence 65 - UUUCAUGUCGAUUUCAUUUCAUG - 87
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218