miRBase entry: dpe-mir-305

Stem-loop dpe-mir-305


Accession
MI0009313
Description
Drosophila persimilis dpe-mir-305 precursor miRNA
Gene family
MIPF0000158; mir-305


Sequence

caugucuAUUGUACUUCAUCAGGUGCUCUGguguguccuguaacccggcacauguugaaguacacucaauaug
(((((....(((((((((.((.(((((..((.((........))))))))).)).)))))))))....)))))

Structure
     cuAU         U  G     CU  u  guc 
caugu    UGUACUUCA CA GUGCU  Gg gu   c
|||||    ||||||||| || |||||  || ||    
guaua    acaugaagu gu cacgg  cc ca   u
     acuc         u  a     --  -  aug 


Annotation confidence Not enough data
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Genome context
scaffold_5: 1086330-1086402 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dpe-mir-305
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-miR-305

Accession MIMAT0008755
Description Drosophila persimilis dpe-miR-305 mature miRNA
Sequence 8 - AUUGUACUUCAUCAGGUGCUCUG - 30
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218