miRBase entry: dpe-mir-309

Stem-loop dpe-mir-309


Accession
MI0009320
Description
Drosophila persimilis dpe-mir-309 precursor miRNA
Gene family
MIPF0000140; mir-3


Sequence

auuauacgauaaacuuuguucaguuuugccaacuugcuugcaGCACUGGGUGAAGUUUGUCUUAuaau
((((((.(((((((((((((((((.((((..........)))).))))))))))))))))).))))))

Structure
      c                 u    caac 
auuaua gauaaacuuuguucagu uugc    u
|||||| ||||||||||||||||| ||||     
uaauAU CUGUUUGAAGUGGGUCA Gacg    u
      U                 C    uucg 


Annotation confidence Not enough data
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Genome context
scaffold_2: 8905710-8905777 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dpe-mir-309
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-miR-309

Accession MIMAT0008760
Description Drosophila persimilis dpe-miR-309 mature miRNA
Sequence 43 - GCACUGGGUGAAGUUUGUCUUA - 64
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218