miRBase entry: dpe-mir-6-2

Stem-loop dpe-mir-6-2


Accession
MI0009322
Description
Drosophila persimilis dpe-mir-6-2 precursor miRNA
Gene family
MIPF0000119; mir-6


Sequence

caaaaagaagggaacgguugcugcugauguaguucaaguuucgcacaauuuaUAUCACAGUGGCUGUUCUUUUUuguuug
((((.((((((((((((((((((.((((((((.....((...)).....)))))))))))))))))))))))))).))))

Structure
    a                  c        uucaa  u 
caaa agaagggaacgguugcug ugauguag     gu  
|||| |||||||||||||||||| ||||||||     || u
guuu uUUUUUCUUGUCGGUGAC ACUAUauu     cg  
    g                  -        uaaca  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_2: 8906789-8906868 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dpe-mir-6-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-miR-6

Accession MIMAT0008707
Description Drosophila persimilis dpe-miR-6 mature miRNA
Sequence 53 - UAUCACAGUGGCUGUUCUUUUU - 74
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218