miRBase entry: dse-mir-79

Stem-loop dse-mir-79

Accession

MI0009331

Description

Drosophila sechellia dse-mir-79 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

agcugacuugccauugcuuuggcgcuuuagcuguaugauagauuuaaacuacuucaUAAAGCUAGAUUACCAAAGCAUuggcuugugcagau
..(((((..((((.((((((((...(((((((.((((((((.......)))..))))).)))))))...)))))))).))))..)).)))..

Structure

ag   -  uu    u        cgc       g     --   au 
  cug ac  gcca ugcuuugg   uuuagcu uauga  uag  u
  ||| ||  |||| ||||||||   ||||||| |||||  |||  u
  gac ug  cggu ACGAAACC   AGAUCGA AUacu  auc  a
ua   g  uu    U        AUU       A     uc   aa

Annotation confidence Not enough data

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Genome context

scaffold_7: 345568-345659 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-79

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-79

Accession	MIMAT0008769
Description	Drosophila sechellia dse-miR-79 mature miRNA
Sequence	57 - UAAAGCUAGAUUACCAAAGCAU - 78
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218