miRBase entry: dse-mir-310

Stem-loop dse-mir-310


Accession
MI0009341
Description
Drosophila sechellia dse-mir-310 precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

aacauaaacauuugcAGGACGGGUCGUGUGUCAGUguauuuacuucuuaacuaUAUUGCACACUUCCCGGCCUUUaaauguccaauguu
(((((..(((((((.(((.((((..(((((.(((((((.(((.....))).))))))))))))..)))).))).)))))))...)))))

Structure
     -aa       c   A    UC     U       u   c 
aacau   acauuug AGG CGGG  GUGUG CAGUgua uua u
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau aau c
     acc       U   G    UU     -       c   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_1: 14025480-14025568 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dse-mir-310
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-310-3p

Accession MIMAT0008779
Description Drosophila sechellia dse-miR-310-3p mature miRNA
Sequence 54 - UAUUGCACACUUCCCGGCCUUU - 75
Evidence experimental
Illumina [2]

Mature dse-miR-310-5p

Accession MIMAT0037342
Description Drosophila sechellia dse-miR-310-5p mature miRNA
Sequence 16 - AGGACGGGUCGUGUGUCAGU - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250