miRBase entry: dse-mir-100

Stem-loop dse-mir-100

Accession

MI0009358

Description

Drosophila sechellia dse-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

ccauuaacagaAACCCGUAAAUCCGAACUUGUGcuguuuuauaucuguuacaagaccggcauuaugggagucugucaaugca
.((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).))))..

Structure

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau

Annotation confidence Not enough data

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Genome context

scaffold_7: 2092736-2092817 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dse-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-100

Accession	MIMAT0008796
Description	Drosophila sechellia dse-miR-100 mature miRNA
Sequence	12 - AACCCGUAAAUCCGAACUUGUG - 33
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218