miRBase entry: dse-mir-309

Stem-loop dse-mir-309


Accession
MI0009366
Description
Drosophila sechellia dse-mir-309 precursor miRNA
Gene family
MIPF0000140; mir-3


Sequence

auuauacgacaaaccuuguucgguuuugccaauuuccaagccaGCACUGGGUAAAGUUUGUCCUAuaau
((((((.(((((((.(((((((((.(((.(.........).))).))))))))).))))))).))))))

Structure
      c       c         u   c aau 
auuaua gacaaac uuguucggu uug c   u
|||||| ||||||| ||||||||| ||| |   u
uaauAU CUGUUUG AAUGGGUCA Gac g   c
      C       A         C   c aac 


Annotation confidence Not enough data
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Genome context
scaffold_1: 13063938-13064006 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dse-mir-309
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-309

Accession MIMAT0008803
Description Drosophila sechellia dse-miR-309 mature miRNA
Sequence 44 - GCACUGGGUAAAGUUUGUCCUA - 65
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218