miRBase entry: dse-mir-124

Stem-loop dse-mir-124


Accession
MI0009402
Description
Drosophila sechellia dse-mir-124 precursor miRNA
Gene family
MIPF0000021; mir-124


Sequence

uacguuuuucuccugguauccacuguaggccuauauguauuuccaccaUAAGGCACGCGGUGAAUGCCAAGagcgaacgca
..(((((..(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))).)))))..

Structure
ua     uu   c      c      ag    a    uau 
  cguuu  cuc ugguau cacugu  gccu uaug   u
  |||||  ||| |||||| ||||||  |||| ||||   u
  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
ac     -c   A      A      CA    -    cac 


Annotation confidence Not enough data
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Genome context
scaffold_7: 1207328-1207408 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dse-mir-124
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-124

Accession MIMAT0008839
Description Drosophila sechellia dse-miR-124 mature miRNA
Sequence 49 - UAAGGCACGCGGUGAAUGCCAAG - 71
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218