miRBase entry: dsi-mir-313

Stem-loop dsi-mir-313


Accession
MI0009439
Description
Drosophila simulans dsi-mir-313 precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

uucUGCUGCGCAUUGGGGCACUACUGuuuuuuuuaaauugagUAUUGCACUUUUCACAGCCUUAaa
....((((.(....((((((.((((...............)))).))).)))..).))))......

Structure
--uucU    C CAUU   -   C    Guuuuu 
      GCUG G    GGG GCA UACU      u
      |||| |    ||| ||| ||||      u
      CGAC C    UUC CGU AUga      u
aaAUUC    A --UU   A   U    guuaaa 


Annotation confidence Not enough data
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Genome context
chr2R: 15132988-15133053 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from dsi-mir-313
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-313-3p

Accession MIMAT0008874
Description Drosophila simulans dsi-miR-313-3p mature miRNA
Sequence 43 - UAUUGCACUUUUCACAGCCUUA - 64
Evidence experimental
Illumina [2]

Mature dsi-miR-313-5p

Accession MIMAT0037348
Description Drosophila simulans dsi-miR-313-5p mature miRNA
Sequence 4 - UGCUGCGCAUUGGGGCACUACUG - 26
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250