miRBase entry: dvi-mir-279

Stem-loop dvi-mir-279

Accession

MI0009482

Description

Drosophila virilis dvi-mir-279 precursor miRNA

Gene family

MIPF0000184; mir-279

Literature search

1 open access papers mention dvi-mir-279
(7 sentences)

Sequence

guacuacuguuuuuAGUGAGUGAGGGUCCAGUGUUUCACAuucguuuuuucaaguauuugUGACUAGAUCCACACUCAUUAAcaacgguaguuc
..(((((((((.((((((((((.(((((.((....(((((..................))))))).))))).)))))))))).)))))))))..

Structure

gu         u          A     C  UGUU     uucguuuu 
  acuacuguu uuAGUGAGUG GGGUC AG    UCACA        u
  ||||||||| |||||||||| ||||| ||    |||||         
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu        u
cu         c          A     A  ----     uuaugaac

Annotation confidence Not enough data

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Genome context

scaffold_12822: 2330926-2331019 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-279

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-279-3p

Accession	MIMAT0008915
Description	Drosophila virilis dvi-miR-279-3p mature miRNA
Sequence	61 - UGACUAGAUCCACACUCAUUAA - 82
Evidence	experimental Illumina [2]

Mature dvi-miR-279-5p

Accession	MIMAT0032047
Description	Drosophila virilis dvi-miR-279-5p mature miRNA
Sequence	15 - AGUGAGUGAGGGUCCAGUGUUUCACA - 40
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372