miRBase entry: dvi-mir-313

Stem-loop dvi-mir-313


Accession
MI0009485
Description
Drosophila virilis dvi-mir-313 precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

uuuUCGGCUGUGGUCAGUGUCAAUUcuuuuuuuuuauuuuuacaagUAUUGCACUUUUCACGGCCGGAaaa
(((((((((((((..((((.((((.(((...............))).))))))))..))))))))))))).

Structure
-             UC    U    U   uuuuuu 
 uuuUCGGCUGUGG  AGUG CAAU cuu      u
 |||||||||||||  |||| |||| |||      a
 aaAGGCCGGCACU  UCAC GUUA gaa      u
a             UU    -    U   cauuuu 


Annotation confidence Not enough data
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Genome context
scaffold_12875: 13669117-13669187 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-313
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-313-3p

Accession MIMAT0008918
Description Drosophila virilis dvi-miR-313-3p mature miRNA
Sequence 47 - UAUUGCACUUUUCACGGCCGGA - 68
Evidence experimental
Illumina [2]

Mature dvi-miR-313-5p

Accession MIMAT0032050
Description Drosophila virilis dvi-miR-313-5p mature miRNA
Sequence 4 - UCGGCUGUGGUCAGUGUCAAUU - 25
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372