Stem-loop dvi-mir-9c

Accession

MI0009491

Description

Drosophila virilis dvi-mir-9c precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

2 open access papers mention dvi-mir-9c
(4 sentences)

Sequence

auuuuugcuguuUCUUUGGUAUUCUAGCUGUAGAuuguuuuuacaguuuguaucaucUAAAGCUUUUAUACCAAAGCUccagcuuaaau
((((..((((...(((((((((...((((.(((((......((((...))))..))))).))))...)))))))))...))))..))))

Structure

    uu    uuU         UCU    G     uguuuu    g 
auuu  gcug   CUUUGGUAU   AGCU UAGAu      uaca  
||||  ||||   |||||||||   |||| |||||      |||| u
uaaa  cgac   GAAACCAUA   UCGA AUcua      augu  
    uu    cUC         UUU    A     ----cu    u 

Annotation confidence Not enough data

Genome context

scaffold_12963: 12863849-12863937 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dvi-mir-9c

Mature dvi-miR-9c-5p

• Accession: MIMAT0008924
• Description: Drosophila virilis dvi-miR-9c-5p mature miRNA
• Sequence: 13 - UCUUUGGUAUUCUAGCUGUAGA - 34
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-9c-3p

• Accession: MIMAT0032054
• Description: Drosophila virilis dvi-miR-9c-3p mature miRNA
• Sequence: 58 - UAAAGCUUUUAUACCAAAGCU - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372