Stem-loop dvi-mir-210

Accession

MI0009494

Description

Drosophila virilis dvi-mir-210 precursor miRNA

Gene family

MIPF0000086; mir-210

Sequence

gguacuuauugcAGCUGCUGGCCACUGCACAAGAuuagacucaagacucUUGUGCGUGUGACAGCGGCUAuuguaagagaccag
(((.(((((...((((((((..((((((((((((((........)).))))))))).))).))))))))...)))))..)))..

Structure

--   -a     ugc        GC   -         -  aga 
  ggu  cuuau   AGCUGCUG  CAC UGCACAAGA uu   c
  |||  |||||   ||||||||  ||| ||||||||| ||    
  cca  gaaug   UCGGCGAC  GUG GCGUGUUcu ag   u
ga   ga     uuA        -A   U         c  aac 

Annotation confidence Not enough data

Genome context

scaffold_12928: 1257219-1257302 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-210

Mature dvi-miR-210-3p

• Accession: MIMAT0008928
• Description: Drosophila virilis dvi-miR-210-3p mature miRNA
• Sequence: 50 - UUGUGCGUGUGACAGCGGCUA - 70
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-210-5p

• Accession: MIMAT0032056
• Description: Drosophila virilis dvi-miR-210-5p mature miRNA
• Sequence: 13 - AGCUGCUGGCCACUGCACAAGA - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372