Stem-loop dvi-mir-133

Accession

MI0009502

Description

Drosophila virilis dvi-mir-133 precursor miRNA

Gene family

MIPF0000029; mir-133

Sequence

caacgcuguguguAGUUGGUUGACAUCGGGUCAGAucuauuucugaaagcauUUGGUCCCCUUCAACCAGCUGUagcagugguugaa
(((((((((...(((((((((((....(((((((((((.........)).)))))).)))..)))))))))))..))))).))))..

Structure

--    -     gug           CAUC   -      -  auu 
  caac gcugu   uAGUUGGUUGA    GGG UCAGAu cu   u
  |||| |||||   |||||||||||    ||| |||||| ||   c
  guug ugacg   GUCGACCAACU    CCC GGUUua ga   u
aa    g     -aU           --UC   U      c  aag 

Annotation confidence Not enough data

Genome context

scaffold_12963: 13475791-13475877 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-133

Mature dvi-miR-133-3p

• Accession: MIMAT0008936
• Description: Drosophila virilis dvi-miR-133-3p mature miRNA
• Sequence: 53 - UUGGUCCCCUUCAACCAGCUGU - 74
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-133-5p

• Accession: MIMAT0032062
• Description: Drosophila virilis dvi-miR-133-5p mature miRNA
• Sequence: 14 - AGUUGGUUGACAUCGGGUCAGA - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372