miRBase entry: dvi-mir-124

Stem-loop dvi-mir-124


Accession
MI0009505
Description
Drosophila virilis dvi-mir-124 precursor miRNA
Gene family
MIPF0000021; mir-124


Sequence

ucguuugguacguuuuucuccuGGUAUCCACUGUAGGCCUCUAUGaauuuugaccaUAAGGCACGCGGUGAAUGCCAAGagcgaacgaaacucuacaa
..((((.((.((((((.....((((((.((((((..((((.((((.........))))))))..)))))).)))))))))))).)).)))).......

Structure
-----uc    g  a      ucucc      C      AG    C    aau 
       guuu gu cguuuu     uGGUAU CACUGU  GCCU UAUG   u
       |||| || ||||||     |||||| ||||||  |||| ||||   u
       caaa ca gcgaGA     ACCGUA GUGGCG  CGGA AUac   u
aacaucu    g  a      -----      A      CA    -    cag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_12963: 16493163-16493260 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dvi-mir-124
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-124-3p

Accession MIMAT0008939
Description Drosophila virilis dvi-miR-124-3p mature miRNA
Sequence 57 - UAAGGCACGCGGUGAAUGCCAAG - 79
Evidence experimental
Illumina [2]

Mature dvi-miR-124-5p

Accession MIMAT0032065
Description Drosophila virilis dvi-miR-124-5p mature miRNA
Sequence 23 - GGUAUCCACUGUAGGCCUCUAUG - 45
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372