miRBase entry: dvi-mir-6-3

Stem-loop dvi-mir-6-3

Accession

MI0009511

Description

Drosophila virilis dvi-mir-6-3 precursor miRNA

Gene family

MIPF0000119; mir-6

Sequence

aaggaAGAGAACGUUCGCUGUUGAUGUAgucgaccuuuguacucuuuaUAUCACAGUGGCUGUUCUUUUUugu
..(((((((((((.(((((((.(((((((................)))))))))))))).)))))))))))..

Structure

aa           U       U       ucgaccu 
  ggaAGAGAACG UCGCUGU GAUGUAg       u
  ||||||||||| ||||||| |||||||        
  uUUUUUCUUGU GGUGACA CUAUauu       u
ug           C       -       ucucaug

Annotation confidence Not enough data

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Genome context

scaffold_12875: 4112960-4113032 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dvi-mir-6-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-6-3p

Accession	MIMAT0008923
Description	Drosophila virilis dvi-miR-6-3p mature miRNA
Sequence	49 - UAUCACAGUGGCUGUUCUUUUU - 70
Evidence	experimental Illumina [2]

Mature dvi-miR-6-3-5p

Accession	MIMAT0032070
Description	Drosophila virilis dvi-miR-6-3-5p mature miRNA
Sequence	6 - AGAGAACGUUCGCUGUUGAUGUA - 28
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372