miRBase entry: dvi-mir-316

Stem-loop dvi-mir-316


Accession
MI0009512
Description
Drosophila virilis dvi-mir-316 precursor miRNA
Gene family
MIPF0000254; mir-316


Sequence

aaguucuagucgauuUGUCUUUUUCCGCUUACUGGcguuuuauugagcaacgACAGGAAAGGGAAAAAGGCGUAuuuacuaugaauuu
((((((((((.(((.(((((((((((.(((.(((.((((.........)))).)))..)))))))))))))).))).)))).))))))

Structure
      -    c   u           G   -A   G    uua 
aaguuc uagu gau UGUCUUUUUCC CUU  CUG cguu   u
|||||| |||| ||| ||||||||||| |||  ||| ||||   u
uuuaag auca uuA GCGGAAAAAGG GAA  GAC gcaa   g
      u    u   U           -   AG   A    cga 


Annotation confidence Not enough data
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Genome context
scaffold_13049: 24266839-24266926 [+]

Database links

Mature dvi-miR-316-5p

Accession MIMAT0008945
Description Drosophila virilis dvi-miR-316-5p mature miRNA
Sequence 16 - UGUCUUUUUCCGCUUACUGG - 35
Evidence experimental
Illumina [2]

Mature dvi-miR-316-3p

Accession MIMAT0032071
Description Drosophila virilis dvi-miR-316-3p mature miRNA
Sequence 53 - ACAGGAAAGGGAAAAAGGCGUA - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372