miRBase entry: dvi-mir-317

Stem-loop dvi-mir-317


Accession
MI0009515
Description
Drosophila virilis dvi-mir-317 precursor miRNA
Gene family
MIPF0000144; mir-317


Sequence

ugcaauugccgcUGGGAUACACCCUGUGCUCGCUuugaauugugcaagcaagUGAACACAGCUGGUGGUAUCCAGUggccguuggc
..((((.(((((((((...(((((((((.(((((......(((....)))))))).)))))..))))...))))))))).))))..

Structure
ug    u         AUA    --     C     uugaau   g 
  caau gccgcUGGG   CACC  CUGUG UCGCU      ugu c
  |||| |||||||||   ||||  ||||| |||||      |||  
  guug cggUGACCU   GUGG  GACAC AGUga      acg a
cg    c         AUG    UC     A     ------   a 


Annotation confidence Not enough data
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Genome context
scaffold_12855: 2698541-2698626 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dvi-mir-317
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-317-3p

Accession MIMAT0008947
Description Drosophila virilis dvi-miR-317-3p mature miRNA
Sequence 53 - UGAACACAGCUGGUGGUAUCCAGU - 76
Evidence experimental
Illumina [2]

Mature dvi-miR-317-5p

Accession MIMAT0032073
Description Drosophila virilis dvi-miR-317-5p mature miRNA
Sequence 13 - UGGGAUACACCCUGUGCUCGCU - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372