miRBase entry: dvi-mir-286

Stem-loop dvi-mir-286


Accession
MI0009517
Description
Drosophila virilis dvi-mir-286 precursor miRNA
Gene family
MIPF0000225; mir-286


Sequence

uuaaaauuaaauGGCGAUUGUCGGUAUGGUCGCuuuuucaaacaauauaccauuaucuauauaaagUGACUAGACCGAACACUCGUGCUauaauuuuaaaa
(((((((((....((((.(((((((.((((((((((........(((((........))))))))))))))).)))).))).))))....)))))))))..

Structure
--         aauG    U   -    A          uucaaaca     cca 
  uuaaaauua    GCGA UGU CGGU UGGUCGCuuu        auaua   u
  |||||||||    |||| ||| |||| ||||||||||        |||||    
  aauuuuaau    UGCU ACA GCCA AUCAGUgaaa        uauau   u
aa         aUCG    C   A    G          --------     cua 


Annotation confidence Not enough data
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Genome context
scaffold_12875: 4112127-4112227 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dvi-mir-286
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-286-3p

Accession MIMAT0008950
Description Drosophila virilis dvi-miR-286-3p mature miRNA
Sequence 67 - UGACUAGACCGAACACUCGUGCU - 89
Evidence experimental
Illumina [2]

Mature dvi-miR-286-5p

Accession MIMAT0032074
Description Drosophila virilis dvi-miR-286-5p mature miRNA
Sequence 13 - GGCGAUUGUCGGUAUGGUCGC - 33
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372