Stem-loop dvi-mir-34

Accession

MI0009523

Description

Drosophila virilis dvi-mir-34 precursor miRNA

Gene family

MIPF0000039; mir-34

Literature search

1 open access papers mention dvi-mir-34
(1 sentences)

Sequence

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUguguggccaauugacaaaucaCAGCCACUAUCUUCACUGCCGCCgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((................))))))))))).)).))))))))..))).)))))

Structure

ug   a  -   uu        U  U   C        uggccaa 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUgug       u
  ||| || |||  |||||||| || ||| ||||||||        
  cga ac gcg  GCCGUCAC UC AUC ACCGACac       u
--   -  a   CC        U  U   -        uaaacag 

Annotation confidence Not enough data

Genome context

scaffold_12855: 2682554-2682640 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-34

Mature dvi-miR-34-5p

• Accession: MIMAT0008955
• Description: Drosophila virilis dvi-miR-34-5p mature miRNA
• Sequence: 14 - UGGCAGUGUGGUUAGCUGGUU - 34
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-34-3p

• Accession: MIMAT0032078
• Description: Drosophila virilis dvi-miR-34-3p mature miRNA
• Sequence: 56 - CAGCCACUAUCUUCACUGCCGCC - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372