miRBase entry: dvi-mir-10

Stem-loop dvi-mir-10


Accession
MI0009528
Description
Drosophila virilis dvi-mir-10 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention dvi-mir-10
(1 sentences)

Sequence

ccacguccACCCUGUAGAUCCGAAUUUGUUguacacuaguuuuaaggaCAAAUUCGGUUCUAGAGAGGUUUcugugg
(((((...(((((.((((.(((((((((((.(............).))))))))))).)))).)).)))...)))))

Structure
     ucc   -  G    U           g acacu 
ccacg   ACC CU UAGA CCGAAUUUGUU u     a
|||||   ||| || |||| ||||||||||| |      
ggugu   UGG GA AUCU GGCUUAAACag a     g
     cUU   A  G    U           g auuuu 


Annotation confidence Not enough data
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Genome context
scaffold_13047: 6092064-6092140 [+]

Database links

Mature dvi-miR-10-5p

Accession MIMAT0008960
Description Drosophila virilis dvi-miR-10-5p mature miRNA
Sequence 9 - ACCCUGUAGAUCCGAAUUUGUU - 30
Evidence experimental
Illumina [2]

Mature dvi-miR-10-3p

Accession MIMAT0032083
Description Drosophila virilis dvi-miR-10-3p mature miRNA
Sequence 49 - CAAAUUCGGUUCUAGAGAGGUUU - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372