miRBase entry: dvi-mir-280

Stem-loop dvi-mir-280


Accession
MI0009532
Description
Drosophila virilis dvi-mir-280 precursor miRNA
Gene family
MIPF0000240; mir-280


Sequence

uggcuuuuaUGUAUUUACGUUGCAUAUGAAAUGAUAuuuauaguaaacagauuauuuuauaugcagguauacaugccaga
((((....(((((..(((.((((((((((((((((...............))))))))))))))))))))))))))))..

Structure
--    uuuu     UU   G                Auuuau 
  uggc    aUGUA  UAC UUGCAUAUGAAAUGAU      a
  ||||    |||||  ||| ||||||||||||||||      g
  accg    uacau  aug gacguauauuuuauua      u
ag    ----     --   -                gacaaa 


Annotation confidence Not enough data
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Genome context
scaffold_12875: 9206208-9206287 [+]

Database links

Mature dvi-miR-280

Accession MIMAT0008965
Description Drosophila virilis dvi-miR-280 mature miRNA
Sequence 10 - UGUAUUUACGUUGCAUAUGAAAUGAUA - 36
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372