miRBase entry: dvi-mir-31a

Stem-loop dvi-mir-31a


Accession
MI0009534
Description
Drosophila virilis dvi-mir-31a precursor miRNA
Gene family
MIPF0000064; mir-31

Literature search
1 open access papers mention dvi-mir-31a
(1 sentences)

Sequence

ucuguuguucaauUGGCAAGAUGUCGGCAUAGCUGAcguuugaaagcgcauuuuuauagCGCUAUGCUGCAUCUAGUCAGUuauucaaugga
(((((((...(((((((.(((((.(((((((((((.((((....))))))..........)))))))))))))).)))))))...)))))))

Structure
       uuc       A     U         ----------  A    u 
ucuguug   aauUGGC AGAUG CGGCAUAGC          UG cguu g
|||||||   ||||||| ||||| |||||||||          || ||||  
agguaac   uUGACUG UCUAC GUCGUAUCG          ac gcga a
       uua       A     -         Cgauauuuuu  -    a 


Annotation confidence Not enough data
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Genome context
scaffold_12875: 16937665-16937756 [-]

Database links

Mature dvi-miR-31a-5p

Accession MIMAT0008967
Description Drosophila virilis dvi-miR-31a-5p mature miRNA
Sequence 14 - UGGCAAGAUGUCGGCAUAGCUGA - 36
Evidence experimental
Illumina [2]

Mature dvi-miR-31a-3p

Accession MIMAT0032087
Description Drosophila virilis dvi-miR-31a-3p mature miRNA
Sequence 60 - CGCUAUGCUGCAUCUAGUCAGU - 81
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372