Stem-loop sequence dvi-mir-6-1

AccessionMI0009537 (change log)
DescriptionDrosophila virilis miR-6-1 stem-loop
Gene family MIPF0000119; mir-6
Stem-loop
   ag            a       -------       u 
5'   uagagagaauag cgcugug       cuguaug u
     |||||||||||| |||||||       ||||||| u
3'   guuuuucuuguc gugacac       gguaugc u
   au            g       uauaucu       g 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (DroVir3) Overlapping transcripts
scaffold_12875: 4112632-4112701 [+]
intergenic
Clustered miRNAs
< 10kb from dvi-mir-6-1
dvi-mir-309scaffold_12875: 4111809-4111882 [+]
dvi-mir-3scaffold_12875: 4111962-4112026 [+]
dvi-mir-286scaffold_12875: 4112127-4112227 [+]
dvi-mir-4scaffold_12875: 4112313-4112393 [+]
dvi-mir-5scaffold_12875: 4112468-4112537 [+]
dvi-mir-6-1scaffold_12875: 4112632-4112701 [+]
dvi-mir-6-2scaffold_12875: 4112784-4112863 [+]
dvi-mir-6-3scaffold_12875: 4112960-4113032 [+]
Database links

Mature sequence dvi-miR-6-1-5p

Accession MIMAT0032090
Sequence

6 - 

agagaauagacgcugugcugua

 - 27

Get sequence
Evidence experimental; Illumina [2]

Mature sequence dvi-miR-6-3p

Accession MIMAT0008923
Previous IDsdvi-miR-6
Sequence

46 - 

uaucacaguggcuguucuuuuu

 - 67

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2
PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).