miRBase entry: dvi-mir-219

Stem-loop dvi-mir-219


Accession
MI0009546
Description
Drosophila virilis dvi-mir-219 precursor miRNA
Gene family
MIPF0000044; mir-219


Sequence

uaauucgauuuuuagcuaUGAUUGUCCAAACGCAAUUCUUGuugauuucaaauacucaAGGGUUGCGACUGGGCAUCGCGgcucgaaaugagaaucc
..((((.(((((.((((.((((.(((((..(((((((((((...(((...)))...)))))))))))..))))))))).)))).)))))..))))..

Structure
ua    -g     u    a    U     AA           uug   u 
  auuc  auuuu agcu UGAU GUCCA  CGCAAUUCUUG   auu  
  ||||  ||||| |||| |||| |||||  |||||||||||   ||| c
  uaag  uaaag ucgG GCUA CGGGU  GCGUUGGGAac   uaa  
cc    ag     c    C    -     CA           uca   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_13049: 5991431-5991527 [-]

Database links

Mature dvi-miR-219-5p

Accession MIMAT0008978
Description Drosophila virilis dvi-miR-219-5p mature miRNA
Sequence 19 - UGAUUGUCCAAACGCAAUUCUUG - 41
Evidence experimental
Illumina [2]

Mature dvi-miR-219-3p

Accession MIMAT0032098
Description Drosophila virilis dvi-miR-219-3p mature miRNA
Sequence 59 - AGGGUUGCGACUGGGCAUCGCG - 80
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372