miRBase entry: dya-mir-310

Stem-loop dya-mir-310


Accession
MI0009665
Description
Drosophila yakuba dya-mir-310 precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

acacaaacauuugcAGGACGGGUCGUGUGGCAGUGuauugauuucuuagcuaUAUUGCACACUUCCCGCCCUUUaaauguccaguguu
((((..(((((((.(((.((((..(((((.(((((((((((....)))).))))))))))))..)))).))).)))))))...)))).

Structure
-    -aa       c   A    UC     G       -    u 
 acac   acauuug AGG CGGG  GUGUG CAGUGua uuga u
 ||||   ||||||| ||| ||||  ||||| ||||||| ||||  
 ugug   uguaaaU UCC GCCC  CACAC GUUAUau gauu u
u    acc       U   C    UU     -       c    c 


Annotation confidence Not enough data
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Genome context
chr2R: 12724935-12725022 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dya-mir-310
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dya-miR-310-3p

Accession MIMAT0009092
Description Drosophila yakuba dya-miR-310-3p mature miRNA
Sequence 53 - UAUUGCACACUUCCCGCCCUUU - 74
Evidence experimental
Illumina [2]

Mature dya-miR-310-5p

Accession MIMAT0037350
Description Drosophila yakuba dya-miR-310-5p mature miRNA
Sequence 15 - AGGACGGGUCGUGUGGCAGUG - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250