miRBase entry: pta-MIR1311

Stem-loop pta-MIR1311


Accession
MI0009708
Description
Pinus taeda pta-MIR1311 precursor miRNA
Gene family
MIPF0001130; MIR1311


Sequence

guaggaacaggcgggcuggcauaacuccgcccauauuuuacugucagagauggUCAGAGUUUUGCCAGUUCCGCCcauuccuacug
(((((((..((((((((((((.(((((.(.((((.((((......)))))))).).))))).)))))).))))))..)))))))..

Structure
--       ca      -      u     c c    a    ac 
  guaggaa  ggcggg cuggca aacuc g ccau uuuu  u
  |||||||  |||||| |||||| ||||| | |||| ||||   
  cauccuu  CCGCCU GACCGU UUGAG C ggua gaga  g
gu       ac      U      U     A U    -    cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR1311

Accession MIMAT0009128
Description Pinus taeda pta-miR1311 mature miRNA
Sequence 54 - UCAGAGUUUUGCCAGUUCCGCC - 75
Evidence experimental
454 [1]

References

  1. PubMed ID: 18323537
    Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
    "Genome Res (2008) 18:571-584