Stem-loop pta-MIR1316

Accession

MI0009713

Description

Pinus taeda pta-MIR1316 precursor miRNA

Sequence

ggcagauccagaauaagaacaaauugggcaaugaagguguaaaagaaaagaucuUCCAUACACAAACCAUUGGAAuccuucuuauucugcaauuggauugggcaaugaa
.((.(((((((((((((((......((((((((...(((((.((((.....))))...)))))....)))))...))))))))))))......))))))..))......

Structure

-----g  -a      ------         caaauu   ---     -aag     --a    a 
      gc  gaucca      gaauaagaa      ggg   caaug    gugua   aaga a
      ||  ||||||      |||||||||      |||   |||||    |||||   |||| a
      cg  uuaggu      cuuauucuu      ccu   GUUAC    CACAU   Uucu g
aaguaa  gg      uaacgu         ------   AAG     CAAA     ACC    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR1316

• Accession: MIMAT0009133
• Description: Pinus taeda pta-miR1316 mature miRNA
• Sequence: 55 - UCCAUACACAAACCAUUGGAA - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584