miRBase entry: bta-mir-133a-1

Stem-loop bta-mir-133a-1


Accession
MI0009733
Description
Bos taurus bta-mir-133a-1 precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
23 open access papers mention bta-mir-133a-1
(99 sentences)

Sequence

30702 reads, 326 reads per million, 66 experiments
ugggaccgaaugcuuugcuaaagcugguaaaauggaaccaaaucaacuguucgauggaUUUGGUCCCCUUCAACCAGCUGuagcugcgcauugau
........(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))...

Structure
ugggaccg     uuu    a       aa  u  a        aacug 
        aaugc   gcua agcuggu  aa gg accaaauc     u
        |||||   |||| |||||||  || || ||||||||      
        uuacg   cgau UCGACCA  UU CC UGGUUUag     u
-----uag     cgu    G       AC  C  C        guagc 


Annotation confidence High
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Genome context
chr13: 55446236-55446330 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-133a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-133a

Accession MIMAT0009225
Description Bos taurus bta-miR-133a mature miRNA
Sequence 59 - UUUGGUCCCCUUCAACCAGCUG - 80
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125