Stem-loop sequence bta-mir-383

Accession

MI0009823 (change log)

Description

Bos taurus miR-383 stem-loop

Gene family

MIPF0000137; mir-383

Literature search

2 open access papers mention bta-mir-383
(12 sentences)

Stem-loop

      -c  a      aa    a        --    gu 
5' cuc  uc gaucag  ggug uuguggcu  uugg  g
   |||  || ||||||  |||| ||||||||  ||||  g
3' gag  ag cugguc  ucac gacaccga  aacu  a
      aa  a      cg    -        cu    au 

Deep sequencing

277 reads, 0 reads per million, 50 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr27: 21444823-21444895 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR383
• miRBase Tracker:MI0009823

Mature sequence bta-miR-383

• Accession: MIMAT0009309
• Sequence: 7 - agaucagaaggugauuguggcu - 28
• Deep sequencing: 265 reads, 50 experiments
• Evidence: by similarity; MI0000791
• Predicted targets:
  • TargetScanVert:bta-miR-383

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).