miRBase entry: bta-mir-452

Stem-loop bta-mir-452


Accession
MI0009838
Description
Bos taurus bta-mir-452 precursor miRNA
Gene family
MIPF0000287; mir-452

Literature search
1 open access papers mention bta-mir-452
(1 sentences)

Sequence

18379 reads, 411 reads per million, 66 experiments
gcuaagcacuuacaacUGUUUGCAGAGGAAACUGAGACuuuguaacuauaucucagucucaucugcaaagaaguaagugcuuugc
((.((((((((((...(.((((((((.((.(((((((..(.......)..))))))).)).)))))))).).)))))))))).))

Structure
  u          aac G        G  A       Cu ug 
gc aagcacuuac   U UUUGCAGA GA ACUGAGA  u  u
|| ||||||||||   | |||||||| || |||||||  |  a
cg uucgugaaug   a aaacgucu cu ugacucu  a  a
  u          --a g        a  c       au uc 


Annotation confidence High
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Genome context
chrX: 34882394-34882478 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-452
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-452

Accession MIMAT0009324
Description Bos taurus bta-miR-452 mature miRNA
Sequence 17 - UGUUUGCAGAGGAAACUGAGAC - 38
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125