miRBase entry: bta-mir-486

Stem-loop bta-mir-486


Accession
MI0009843
Description
Bos taurus bta-mir-486 precursor miRNA
Gene family
MIPF0000220; mir-486

Literature search
27 open access papers mention bta-mir-486
(177 sentences)

Sequence

41360 reads, 516 reads per million, 67 experiments
gccagcuuggaccugcguccucccugacgggUCCUGUACUGAGCUGCCCCGAGgcccuucgcugugcccagcucgggucagcucaguaccgggcgcgucggggugggagucggccggaagcagg
.((.((((((.((.((.(((.((((((((.((((.(((((((((((.((((((((.(......).)))....))))).))))))))))).)))).)))))))).))).)).))))..)))).))

Structure
g  a    --  a  u  g   u        g    U           C     ----   c uu 
 cc gcuu  gg cc gc ucc cccugacg gUCC GUACUGAGCUG CCCGA    Ggc c  c
 || ||||  || || || ||| |||||||| |||| ||||||||||| |||||    ||| |   
 gg cgaa  cc gg ug ggg ggggcugc cggg caugacucgac gggcu    ccg g  g
-  a    gg  -  c  a   u        g    c           u     cgac   u uc 


Annotation confidence Not enough data
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Genome context
chr27: 36501847-36501970 [-]

Database links

Mature bta-miR-486

Accession MIMAT0009329
Description Bos taurus bta-miR-486 mature miRNA
Sequence 32 - UCCUGUACUGAGCUGCCCCGAG - 53
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125