miRBase entry: bta-mir-488

Stem-loop bta-mir-488


Accession
MI0009844
Description
Bos taurus bta-mir-488 precursor miRNA
Gene family
MIPF0000318; mir-488

Literature search
1 open access papers mention bta-mir-488
(1 sentences)

Sequence

8 reads, 2 reads per million, 6 experiments
gagaaucaucucucccagauaauggcacucucaaacagguuuccagguuguUUGAAAGGCUGUUUCUUGGUCagaagacucucaauuccuucugga
((((.((.(((..((.(((.((((((.((.((((((((.((...)).)))))))).))))))))))).))..))).)).))))...(((....)))

Structure
-------------    a  a   cu  c   u      a  c        g  u 
             gaga uc ucu  cc aga aauggc cu ucaaacag uu  
             |||| || |||  || ||| |||||| || |||||||| || c
             cucu ag aga  GG UCU UUGUCG GA AGUUuguu ga  
aggucuuccuuaa    c  a   CU  U   -      -  A        g  c 


Annotation confidence Not enough data
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Genome context
chr16: 59871602-59871697 [-]

Database links

Mature bta-miR-488

Accession MIMAT0009330
Description Bos taurus bta-miR-488 mature miRNA
Sequence 52 - UUGAAAGGCUGUUUCUUGGUC - 72
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125