miRBase entry: bta-mir-505

Stem-loop bta-mir-505


Accession
MI0009856
Description
Bos taurus bta-mir-505 precursor miRNA
Gene family
MIPF0000217; mir-505

Literature search
1 open access papers mention bta-mir-505
(1 sentences)

Sequence

1168 reads, 48 reads per million, 70 experiments
aaauugaugcacccagugggggagccaggaaguauugauguuucuaccaguuuagCGUCAACACUUGCUGGUUUCCUcucuggagcguca
....((((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).))))))

Structure
aaau      ac    u           g    a        ucua 
    ugaugc  ccag gggggagccag aagu uugauguu    c
    ||||||  |||| ||||||||||| |||| ||||||||    c
    acugcg  gguc cUCCUUUGGUC UUCA AACUGCga    a
----      -a    u           G    C        uuug 


Annotation confidence Not enough data
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Genome context
chrX: 23507268-23507357 [-]

Database links

Mature bta-miR-505

Accession MIMAT0009341
Description Bos taurus bta-miR-505 mature miRNA
Sequence 56 - CGUCAACACUUGCUGGUUUCCU - 77
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125