miRBase entry: bta-mir-671

Stem-loop bta-mir-671


Accession
MI0009887
Description
Bos taurus bta-mir-671 precursor miRNA
Gene family
MIPF0000358; mir-671

Literature search
4 open access papers mention bta-mir-671
(5 sentences)

Sequence

732 reads, 40 reads per million, 69 experiments
gccgccgaccuggcaggccaggaagaggAGGAAGCCCUGGAGGGGCUGGAGgugauggauguuuuccuccgguucucagggcuccaccuuuuccgggccguggagccagggcuggugc
..(((((.((((((.((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).)))).....))))))..))))).

Structure
gc     -a      ----a    a        A   A      GA           u  ug 
  cgccg  ccuggc     ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg ga  g
  |||||  ||||||     |||| |||||||| ||| ||||||  ||||||||||| ||  a
  guggu  ggaccg     ccgg ccuuuucc ccu cgggac  ucuuggccucc uu  u
-c     cg      aggug    g        a   -      --           u  ug 


Annotation confidence High
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Genome context
chr4: 115031675-115031792 [+]

Database links

Mature bta-miR-671

Accession MIMAT0009365
Description Bos taurus bta-miR-671 mature miRNA
Sequence 29 - AGGAAGCCCUGGAGGGGCUGGAG - 51
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125