miRBase entry: bta-mir-760

Stem-loop bta-mir-760


Accession
MI0009894
Description
Bos taurus bta-mir-760 precursor miRNA
Gene family
MIPF0000395; mir-760

Literature search
1 open access papers mention bta-mir-760
(1 sentences)

Sequence

1400 reads, 55 reads per million, 50 experiments
ggaggaugcugcagcguggggcgcgucgccCCCCUCAGUCCACCAGAGCCCGgauaccuuagaaauuCGGCUCUGGGUCUGUGGGGAgcgaaaugcaacccaaacuccauuuugccg
((((.((((....))))(((..(((((((.((((.(((....((((((((.((((.........))))))))))))..))).)))).))))..)))..)))...)))).........

Structure
---------    gaugcugcagcgu   gc   --    c    U   UCCA        C    acc 
         ggag             ggg  gcg  ucgc CCCC CAG    CCAGAGCC Ggau   u
         ||||             |||  |||  |||| |||| |||    |||||||| ||||   u
         ccuc             ccc  cgu  agcg GGGG GUC    GGUCUCGG Cuua   a
gccguuuua    ----------aaa   aa   aa    A    U   --UG        -    aag 


Annotation confidence High
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Genome context
chr3: 50024716-50024832 [-]

Database links

Mature bta-miR-760-5p

Accession MIMAT0009372
Description Bos taurus bta-miR-760-5p mature miRNA
Sequence 31 - CCCCUCAGUCCACCAGAGCCCG - 52
Evidence not_experimental

Mature bta-miR-760-3p

Accession MIMAT0022951
Description Bos taurus bta-miR-760-3p mature miRNA
Sequence 68 - CGGCUCUGGGUCUGUGGGGA - 87
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125

  3. PubMed ID: 22298343
    Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells
    Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA
    J Cell Biochem (2012) 113:2098-2111