miRBase entry: bta-mir-877

Stem-loop bta-mir-877


Accession
MI0009903
Description
Bos taurus bta-mir-877 precursor miRNA
Gene family
MIPF0000392; mir-877

Literature search
5 open access papers mention bta-mir-877
(7 sentences)

Sequence

508 reads, 49 reads per million, 67 experiments
gcucgagaagGUAGAGGAGAUGGCGCAGGGgacacgggcuaagacugggggcucccgggaccccccaacauguguccucuucucccuccucccagguguacg
.........((..((((((..((.(.((((((((((.........((((((.((....)).))))))...)))))))))).).)))))))))).........

Structure
gcucgagaa  UA      AU  C C          ggcuaagac      c  c 
         gG  GAGGAG  GG G AGGGgacacg         uggggg uc c
         ||  ||||||  || | ||||||||||         |||||| ||  
         cc  cuccuc  cc c ucuccugugu         accccc ag g
gcaugugga  --      --  u u          ------aca      c  g 


Annotation confidence Not enough data
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Genome context
chr23: 28284423-28284524 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-877
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-877

Accession MIMAT0009381
Description Bos taurus bta-miR-877 mature miRNA
Sequence 11 - GUAGAGGAGAUGGCGCAGGG - 30
Evidence not_experimental

References

  1. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125