miRBase entry: mmu-mir-669o

Stem-loop mmu-mir-669o


Accession
MI0009945
Symbol
MGI: Mir669o
Description
Mus musculus mmu-mir-669o precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
12 open access papers mention mmu-mir-669o
(16 sentences)

Sequence

18611 reads, 254 reads per million, 100 experiments
ugcaugugcauguguguaUAGUUGUGUGUGCAUGUUUAUGUguguauuugaauauACAUAACAUACACACACACGUAUaaacacaagcacacacac
((..(((((.(((((.((((..((((((((.(((((.((((((((......))))))))))))).))))))))..)))).))))).)))))..)).

Structure
-  ca     a     g    GU        C     U        au 
 ug  ugugc ugugu uaUA  UGUGUGUG AUGUU AUGUgugu  u
 ||  ||||| ||||| ||||  |||||||| ||||| ||||||||   
 ac  acacg acaca aUAU  ACACACAC UACAA UACAuaua  u
c  ac     a     a    GC        A     -        ag 


Annotation confidence High
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Genome context
chr2: 10514300-10514395 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from mmu-mir-669o
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-669o-5p

Accession MIMAT0009421
Description Mus musculus mmu-miR-669o-5p mature miRNA
Sequence 19 - UAGUUGUGUGUGCAUGUUUAUGU - 41
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

Mature mmu-miR-669o-3p

Accession MIMAT0017347
Description Mus musculus mmu-miR-669o-3p mature miRNA
Sequence 56 - ACAUAACAUACACACACACGUAU - 78
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 18849523
    In-depth characterization of the microRNA transcriptome in a leukemia progression model
    "Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK"
    "Genome Res (2008) 18:1787-1797