miRBase entry: sly-MIR159

Stem-loop sly-MIR159


Accession
MI0009974
Description
Solanum lycopersicum sly-MIR159 precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
21 open access papers mention sly-MIR159
(153 sentences)

Sequence

uggagcuccuugaaguccaacaaaaaaucuaacagguuaaauugagcugcugaccuauggauuccucagcccuaucuauuuaugauuucaaacauauagauagguuuuggguuugcauaugucaggagcuuuauuuuacccuuuguuugaucauuuUUUGGAUUGAAGGGAGCUCUA
(((((((((((..(((((((.(((..(((.(((((((.((((.(((((.(((((.((((.(..(((.((.((((((((..((((........)))))))))))).)).)))..).)))).))))).))))).)))).)))...)))).)))..))).)))))))..)))))))))))

Structure
           ga       c   aa   u    ---   u    u     g     c    g uu   c  c        uu    auu 
uggagcuccuu  aguccaa aaa  auc aaca   ggu aaau gagcu cugac uaug a  ccu ag ccuaucua  uaug   u
|||||||||||  ||||||| |||  ||| ||||   ||| |||| ||||| ||||| |||| |  ||| || ||||||||  ||||    
AUCUCGAGGGA  UUAGGUU uuu  uag uugu   cca uuua uucga gacug auac u  ggg uu ggauagau  auac   c
           AG       U   ac   u    uuc   u    u     g     u    g uu   u  u        --    aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sly-miR159

Accession MIMAT0009141
Description Solanum lycopersicum sly-miR159 mature miRNA
Sequence 157 - UUUGGAUUGAAGGGAGCUCUA - 177
Evidence not_experimental

References

  1. PubMed ID: 18602455
    Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
    "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
    "Gene (2008) 423:1-7