Stem-loop sequence sly-MIR172a

Accession

MI0009976 (change log)

Description

Solanum lycopersicum miR172a stem-loop

Gene family

MIPF0000035; MIR172

Literature search

28 open access papers mention sly-MIR172a
(144 sentences)

Stem-loop

      ug    a          a     aaa   g    --- ug     a     g 
5' aug  gcau aucaagauuc cguga   guu caaa   u  guuau uaauu a
   |||  |||| |||||||||| |||||   ||| ||||   |  ||||| ||||| u
3' uac  cgua uaguucuaag gcacu   caa guuu   g  cggua auuaa g
      gu    g          a     ---   a    auc gu     -     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr6: 46528836-46528941 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075AEB4_4081
• miRBase Tracker:MI0009976

Mature sequence sly-miR172a

• Accession: MIMAT0009143
• Sequence: 86 - agaaucuugaugaugcugcau - 106
• Evidence: by similarity; MI0001503

References

1. PMID:18602455 "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill" Zhang J, Zeng R, Chen J, Liu X, Liao Q Gene. 423:1-7(2008).