miRBase entry: sly-MIR172b

Stem-loop sly-MIR172b


Accession
MI0009977
Description
Solanum lycopersicum sly-MIR172b precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
28 open access papers mention sly-MIR172b
(126 sentences)

Sequence

auguagcaucaucaagauucauacaugaaaauuaagaggcaagguuaaauauguagcuuuaauuugaaaugaaaaauauaauauaucaugaccaugucuauuuauuucaaagugAGAAUCUUGAUGAUGCUGCAU
((((((((((((((((((((.(((.(((((..(((((((((.(((((...(((((......((((........))))....)))))..))))).))))).)))))))))..))).))))))))))))))))))))

Structure
                    a   -a     au    -     a     aau     gcuuua    gaa 
auguagcaucaucaagauuc uac  ugaaa  uaag aggca gguua   augua      auuu   a
|||||||||||||||||||| |||  |||||  |||| ||||| |||||   |||||      ||||    
UACGUCGUAGUAGUUCUAAG gug  acuuu  auuu ucugu ccagu   uauau      uaaa   u
                    A   aa     --    a     a     -ac     --aaua    aag 


Annotation confidence Not enough data
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Comments
This sequence was named MIR172c in [1].

Genome context
chr11: 54397709-54397843 [+]

Database links

Mature sly-miR172b

Accession MIMAT0009144
Description Solanum lycopersicum sly-miR172b mature miRNA
Sequence 115 - AGAAUCUUGAUGAUGCUGCAU - 135
Evidence not_experimental

References

  1. PubMed ID: 18602455
    Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
    "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
    "Gene (2008) 423:1-7