miRBase entry: cfa-mir-18a

Stem-loop cfa-mir-18a


Accession
MI0010324
Description
Canis familiaris cfa-mir-18a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

gugcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuacugcccuaagugcuccuucuggcauaagaaguuaugu
..(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))).....

Structure
---gu         u   --   U    C   U    A   -  aa u 
     gcuuuuugu cUA  AGG GCAU UAG GCAG UAg ug  g a
     ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
     ugaagaaua ggu  ucc cgug auc cguc auc ac  u a
uguau         c   cu   u    a   c    -   u  ga u 


Annotation confidence Not enough data
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Genome context
chr22: 42478138-42478229 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from cfa-mir-18a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-18a

Accession MIMAT0009832
Description Canis familiaris cfa-miR-18a mature miRNA
Sequence 14 - UAAGGUGCAUCUAGUGCAGAUA - 35
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39