miRBase entry: cfa-mir-489

Stem-loop cfa-mir-489


Accession
MI0010355
Description
Canis familiaris cfa-mir-489 precursor miRNA
Gene family
MIPF0000111; mir-489


Sequence

guggcagcuugguggccguauguguggcgccauuuacuugaaccuuuaggaGUGACAUCACAUAUACGGCGGCuaaacugcuac
(((((((.(((((.(((((((((((((.(.((((..(((((....))))))))).).))))))))))))).))))).)))))))

Structure
       c     g             c c    ua     a 
guggcag uuggu gccguaugugugg g cauu  cuuga c
||||||| ||||| ||||||||||||| | ||||  |||||  
caucguc aauCG CGGCAUAUACACU C GUGa  ggauu c
       a     G             A A    --     u 


Annotation confidence Not enough data
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Genome context
chr14: 18980180-18980263 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-489
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-489

Accession MIMAT0009860
Description Canis familiaris cfa-miR-489 mature miRNA
Sequence 52 - GUGACAUCACAUAUACGGCGGC - 73
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39