miRBase entry: cfa-mir-96

Stem-loop cfa-mir-96


Accession
MI0010356
Description
Canis familiaris cfa-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96


Sequence

cugcuuggccgauUUUGGCACUAGCACAUUUUUGCUugugucucuccgcucugagcaaucaugugcagugccaauaugggaaaagcggg
((((((..((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))..)))))).

Structure
-      gg  g  U        A      UU      ---   uc 
 cugcuu  cc au UUGGCACU GCACAU  UUGCUu   gug  u
 ||||||  || || |||||||| ||||||  ||||||   |||   
 ggcgaa  gg ua aaccguga cgugua  aacgag   cgc  c
g      aa  g  u        -      cu      ucu   cu 


Annotation confidence Not enough data
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Genome context
chr14: 7068754-7068842 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cfa-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-96

Accession MIMAT0009861
Description Canis familiaris cfa-miR-96 mature miRNA
Sequence 14 - UUUGGCACUAGCACAUUUUUGCU - 36
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39